Mauve version 2.0 (Progressive Mauve) has been released.
Mauve User Guide
A guide to using Mauve to construct genome alignments, including documentation of the graphical interface, configurable alignment parameters, and output file formats.
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Item Title
Introduction to Mauve
Installing Mauve
Constructing a Genome Alignment
Using the Alignment Viewer
Mauve Output File Formats
Reordering contigs in draft genomes
Using mauveAligner from the command-line
Using progressiveMauve from the command-line
Mauve Version History
Mauve screenshots
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