mems::SMLHeader_s Struct Reference

List of all members.

Public Attributes
uint32	alphabet_bits
	Bits per character in the alphabet - 4 bytes.
boolean	circular
	Circularity of sequence - 1 byte.
char	description [DESCRIPTION_SIZE]
	Freeform text description of sequence data -- 2048 bytes.
signed short	id
	Obsolete ID value - 1 byte, eaten by alignment?
uint64	length
	length of the sequence before circularity - 8 bytes
boolean	little_endian
	Is the byte order little endian? 0==no, !0==yes.
uint64	seed
	The pattern used in each seed.
uint32	seed_length
	The length of the seed mask.
uint32	seed_weight
	The weight of the seed mask.
uint8	translation_table [UINT8_MAX]
	Translation table for ascii characters to binary values -- 256 bytes.
uint32	unique_mers
	Number of unique mers in the sequence 4 bytes.
uint32	version
	Format version - 4 bytes.
uint32	word_size
	Word size on the machine the sequence was translated.

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Member Data Documentation

uint32 mems::SMLHeader_s::alphabet_bits

Bits per character in the alphabet - 4 bytes. Definition at line 1276 of file FileSML.cpp.

boolean mems::SMLHeader_s::circular

Circularity of sequence - 1 byte. Definition at line 1285 of file FileSML.cpp.

char mems::SMLHeader_s::description[DESCRIPTION_SIZE]

Freeform text description of sequence data -- 2048 bytes. Definition at line 1287 of file FileSML.cpp.

signed short mems::SMLHeader_s::id

Obsolete ID value - 1 byte, eaten by alignment? Definition at line 1284 of file FileSML.cpp.

uint64 mems::SMLHeader_s::length

length of the sequence before circularity - 8 bytes Definition at line 1280 of file FileSML.cpp.

boolean mems::SMLHeader_s::little_endian

Is the byte order little endian? 0==no, !0==yes. Definition at line 1283 of file FileSML.cpp.

uint64 mems::SMLHeader_s::seed

The pattern used in each seed. Definition at line 1277 of file FileSML.cpp.

uint32 mems::SMLHeader_s::seed_length

The length of the seed mask. Definition at line 1278 of file FileSML.cpp.

uint32 mems::SMLHeader_s::seed_weight

The weight of the seed mask. Definition at line 1279 of file FileSML.cpp.

uint8 mems::SMLHeader_s::translation_table[UINT8_MAX]

Translation table for ascii characters to binary values -- 256 bytes. Definition at line 1286 of file FileSML.cpp.

uint32 mems::SMLHeader_s::unique_mers

Number of unique mers in the sequence 4 bytes. Definition at line 1281 of file FileSML.cpp.

uint32 mems::SMLHeader_s::version

Format version - 4 bytes. Definition at line 1275 of file FileSML.cpp.

uint32 mems::SMLHeader_s::word_size

Word size on the machine the sequence was translated. Definition at line 1282 of file FileSML.cpp.

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The documentation for this struct was generated from the following file:

• libMems/FileSML.cpp

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