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- a -
amino_acid_codes :
ClustalInterface.cpp
- c -
clustal_outfile :
ClustalInterface.cpp
CODING_SEED :
SeedMasks.h
- d -
debugging_memory :
Memory.h
dna_gap_extend :
ClustalInterface.cpp
dna_gap_open :
ClustalInterface.cpp
dna_pw_ge_penalty :
ClustalInterface.cpp
dna_pw_go_penalty :
ClustalInterface.cpp
dnaflag :
ClustalInterface.cpp
- e -
endgappenalties :
ClustalInterface.cpp
explicit_dnaflag :
ClustalInterface.cpp
- g -
gap_extend :
ClustalInterface.cpp
gap_open :
ClustalInterface.cpp
gap_pos1 :
ClustalInterface.cpp
gcg_outfile :
ClustalInterface.cpp
- i -
interactive :
ClustalInterface.cpp
- m -
max_aa :
ClustalInterface.cpp
max_aln_length :
ClustalInterface.cpp
MAX_DNA_SEED_WEIGHT :
SeedMasks.h
max_names :
ClustalInterface.cpp
MIN_DNA_SEED_WEIGHT :
SeedMasks.h
mt :
twister.c
mti :
twister.c
- n -
names :
ClustalInterface.cpp
nbrf_outfile :
ClustalInterface.cpp
nexus_outfile :
ClustalInterface.cpp
no_weights :
ClustalInterface.cpp
nseqs :
ClustalInterface.cpp
- o -
output_clustal :
ClustalInterface.cpp
output_gcg :
ClustalInterface.cpp
output_gde :
ClustalInterface.cpp
output_nbrf :
ClustalInterface.cpp
output_nexus :
ClustalInterface.cpp
output_order :
ClustalInterface.cpp
output_phylip :
ClustalInterface.cpp
- p -
phylip_outfile :
ClustalInterface.cpp
pw_ge_penalty :
ClustalInterface.cpp
pw_go_penalty :
ClustalInterface.cpp
- s -
seq_array :
ClustalInterface.cpp
seqlen_array :
ClustalInterface.cpp
seqname :
ClustalInterface.cpp
SOLID_SEED :
SeedMasks.h
- t -
titles :
ClustalInterface.cpp
tmat :
ClustalInterface.cpp
- u -
use_endgaps :
ClustalInterface.cpp
usemenu :
ClustalInterface.cpp
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