mems::PairwiseMatchFinder Class Reference

Finds all pairwise matches with unique seeds among a group of sequences. More...

#include <PairwiseMatchFinder.h>

Inheritance diagram for mems::PairwiseMatchFinder:

[legend]Collaboration diagram for mems::PairwiseMatchFinder:

[legend]List of all members.

Public Member Functions
virtual PairwiseMatchFinder *	Clone () const
	PairwiseMatchFinder (const PairwiseMatchFinder &mh)
	PairwiseMatchFinder ()
	~PairwiseMatchFinder ()
Protected Member Functions
virtual boolean	EnumerateMatches (mems::IdmerList &match_list)

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Detailed Description

Finds all pairwise matches with unique seeds among a group of sequences.

Definition at line 23 of file PairwiseMatchFinder.h.

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Constructor & Destructor Documentation

mems::PairwiseMatchFinder::PairwiseMatchFinder (   )

Definition at line 21 of file PairwiseMatchFinder.cpp. Referenced by Clone().

mems::PairwiseMatchFinder::~PairwiseMatchFinder (   )

Definition at line 24 of file PairwiseMatchFinder.cpp.

mems::PairwiseMatchFinder::PairwiseMatchFinder (  const PairwiseMatchFinder &  mh  )

Definition at line 27 of file PairwiseMatchFinder.cpp.

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Member Function Documentation

PairwiseMatchFinder * mems::PairwiseMatchFinder::Clone (   )  const [virtual]

Reimplemented from mems::MemHash. Definition at line 31 of file PairwiseMatchFinder.cpp. References PairwiseMatchFinder().

boolean mems::PairwiseMatchFinder::EnumerateMatches (  mems::IdmerList &  match_list  )  [protected, virtual]

Reimplemented from mems::MemHash. Definition at line 37 of file PairwiseMatchFinder.cpp. References mems::MemHash::HashMatch(), mems::idmer_id_lessthan(), mems::IdmerList, and uint.

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The documentation for this class was generated from the following files:

• libMems/PairwiseMatchFinder.h
• libMems/PairwiseMatchFinder.cpp

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