mems::LCB Class Reference

This class is used to track relationships between LCBs during the LCB determination process. More...

#include <LCB.h>

List of all members.

Public Member Functions
	LCB ()
Public Attributes
int	lcb_id
	A numerical ID that can be assigned to this LCB.
std::vector< uint >	left_adjacency
	'Pointers' (actually IDs) to the LCBs on the left in each sequence
std::vector< int64 >	left_end
	The left end position of the LCB in each sequence.
std::vector< uint >	right_adjacency
	'Pointers' (actually IDs) to the LCBs on the right in each sequence
std::vector< int64 >	right_end
	The right end position of the LCB in each sequence.
bool	to_be_deleted
	set to true if this LCB is about to be deleted, but the deletion hasn't yet been processed
double	weight
	The weight (or coverage) of this LCB.

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Detailed Description

This class is used to track relationships between LCBs during the LCB determination process.

Definition at line 16 of file LCB.h.

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Constructor & Destructor Documentation

mems::LCB::LCB (   )  [inline]

Definition at line 18 of file LCB.h.

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Member Data Documentation

int mems::LCB::lcb_id

A numerical ID that can be assigned to this LCB. Definition at line 23 of file LCB.h. Referenced by mems::computeLCBAdjacencies_v2(), mems::computeLCBAdjacencies_v3(), mems::LCBIDComparator::operator()(), and mems::TrackingLCB< MatchType >::operator=().

std::vector< uint > mems::LCB::left_adjacency

'Pointers' (actually IDs) to the LCBs on the left in each sequence Definition at line 21 of file LCB.h. Referenced by mems::computeLCBAdjacencies_v2(), mems::computeLCBAdjacencies_v3(), and mems::TrackingLCB< MatchType >::operator=().

std::vector< int64 > mems::LCB::left_end

The left end position of the LCB in each sequence. Definition at line 19 of file LCB.h. Referenced by mems::computeLCBAdjacencies_v2(), mems::computeLCBAdjacencies_v3(), mems::LCBLeftComparator::operator()(), and mems::TrackingLCB< MatchType >::operator=().

std::vector< uint > mems::LCB::right_adjacency

'Pointers' (actually IDs) to the LCBs on the right in each sequence Definition at line 22 of file LCB.h. Referenced by mems::computeLCBAdjacencies_v2(), mems::computeLCBAdjacencies_v3(), and mems::TrackingLCB< MatchType >::operator=().

std::vector< int64 > mems::LCB::right_end

The right end position of the LCB in each sequence. Definition at line 20 of file LCB.h. Referenced by mems::computeLCBAdjacencies_v2(), mems::computeLCBAdjacencies_v3(), and mems::TrackingLCB< MatchType >::operator=().

bool mems::LCB::to_be_deleted

set to true if this LCB is about to be deleted, but the deletion hasn't yet been processed Definition at line 25 of file LCB.h. Referenced by mems::computeLCBAdjacencies_v2().

double mems::LCB::weight

The weight (or coverage) of this LCB. Definition at line 24 of file LCB.h. Referenced by mems::computeLCBAdjacencies_v2(), mems::computeLCBAdjacencies_v3(), and mems::TrackingLCB< MatchType >::operator=().

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The documentation for this class was generated from the following file:

• libMems/LCB.h

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