mems::Island Class Reference

A class to represent an island in an alignment. More...

#include <Islands.h>

List of all members.

Public Attributes
int64	leftI
int64	leftJ
int64	rightI
int64	rightJ
uint	seqI
uint	seqJ

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Detailed Description

A class to represent an island in an alignment.

Islands are generally large insertions of a region of sequence relative to another sequence.

Definition at line 35 of file Islands.h.

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Member Data Documentation

int64 mems::Island::leftI

Definition at line 39 of file Islands.h. Referenced by mems::findIslandsRandomWalk(), and mems::simpleFindIslands().

int64 mems::Island::leftJ

Definition at line 40 of file Islands.h. Referenced by mems::findIslandsRandomWalk(), and mems::simpleFindIslands().

int64 mems::Island::rightI

Definition at line 41 of file Islands.h. Referenced by mems::findIslandsRandomWalk(), and mems::simpleFindIslands().

int64 mems::Island::rightJ

Definition at line 42 of file Islands.h. Referenced by mems::findIslandsRandomWalk(), and mems::simpleFindIslands().

uint mems::Island::seqI

Definition at line 37 of file Islands.h. Referenced by mems::findIslandsRandomWalk(), and mems::simpleFindIslands().

uint mems::Island::seqJ

Definition at line 38 of file Islands.h. Referenced by mems::findIslandsRandomWalk(), and mems::simpleFindIslands().

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The documentation for this class was generated from the following file:

• libMems/Islands.h

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