mems::HssCols Class Reference

#include <Islands.h>

List of all members.

Public Attributes
size_t	left_col
size_t	right_col
uint	seqI
uint	seqJ

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Member Data Documentation

size_t mems::HssCols::left_col

Definition at line 57 of file Islands.h. Referenced by mems::ComplementHss(), mems::findHssExcursions(), mems::findHssHomologyHMM(), mems::findHssRandomWalkScoreVector(), mems::findMscFromExcursions(), and mems::findRightEndpoint().

size_t mems::HssCols::right_col

Definition at line 58 of file Islands.h. Referenced by mems::ComplementHss(), mems::findHssExcursions(), mems::findHssHomologyHMM(), mems::findHssRandomWalkScoreVector(), mems::findMscFromExcursions(), and mems::findRightEndpoint().

uint mems::HssCols::seqI

Definition at line 55 of file Islands.h. Referenced by mems::ComplementHss(), mems::findHssExcursions(), mems::findHssHomologyHMM(), mems::findHssRandomWalkScoreVector(), mems::findMscFromExcursions(), and mems::findRightEndpoint().

uint mems::HssCols::seqJ

Definition at line 56 of file Islands.h. Referenced by mems::ComplementHss(), mems::findHssExcursions(), mems::findHssHomologyHMM(), mems::findHssRandomWalkScoreVector(), mems::findMscFromExcursions(), and mems::findRightEndpoint().

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The documentation for this class was generated from the following file:

• libMems/Islands.h

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