mems::GenericMatchSeqManipulator< MatchType > Class Template Reference

#include <ProgressiveAligner.h>

List of all members.

Public Member Functions
template<typename ContainerType> void	AddCopy (ContainerType &c, MatchType *&m) const
void	CropLeft (MatchType *&m, gnSeqI amount) const
void	CropRight (MatchType *&m, gnSeqI amount) const
	GenericMatchSeqManipulator (uint seq)
gnSeqI	LeftEnd (MatchType *&m) const
gnSeqI	Length (MatchType *&m) const
Private Attributes
uint	m_seq

template<class MatchType = mems::AbstractMatch>
class mems::GenericMatchSeqManipulator< MatchType >

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Constructor & Destructor Documentation

template<class MatchType = mems::AbstractMatch> mems::GenericMatchSeqManipulator< MatchType >::GenericMatchSeqManipulator (  uint  seq  )  [inline]

Definition at line 532 of file ProgressiveAligner.h. References uint.

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Member Function Documentation

template<class MatchType = mems::AbstractMatch> template<typename ContainerType> void mems::GenericMatchSeqManipulator< MatchType >::AddCopy (  ContainerType &  c, MatchType *&  m )  const [inline]

Definition at line 538 of file ProgressiveAligner.h.

template<class MatchType = mems::AbstractMatch> void mems::GenericMatchSeqManipulator< MatchType >::CropLeft (  MatchType *&  m, gnSeqI  amount )  const [inline]

Definition at line 535 of file ProgressiveAligner.h.

template<class MatchType = mems::AbstractMatch> void mems::GenericMatchSeqManipulator< MatchType >::CropRight (  MatchType *&  m, gnSeqI  amount )  const [inline]

Definition at line 536 of file ProgressiveAligner.h.

template<class MatchType = mems::AbstractMatch> gnSeqI mems::GenericMatchSeqManipulator< MatchType >::LeftEnd (  MatchType *&  m  )  const [inline]

Definition at line 533 of file ProgressiveAligner.h.

template<class MatchType = mems::AbstractMatch> gnSeqI mems::GenericMatchSeqManipulator< MatchType >::Length (  MatchType *&  m  )  const [inline]

Definition at line 534 of file ProgressiveAligner.h.

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Member Data Documentation

template<class MatchType = mems::AbstractMatch> uint mems::GenericMatchSeqManipulator< MatchType >::m_seq [private]

Definition at line 540 of file ProgressiveAligner.h.

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The documentation for this class was generated from the following file:

• libMems/ProgressiveAligner.h

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