libMems/ProgressiveAligner.cpp File Reference

#include "libMems/ProgressiveAligner.h"
#include "libMems/GreedyBreakpointElimination.h"
#include "libMems/Aligner.h"
#include "libMems/Islands.h"
#include "libMems/DNAFileSML.h"
#include "libMems/MuscleInterface.h"
#include "libMems/gnAlignedSequences.h"
#include "libMems/CompactGappedAlignment.h"
#include "libMems/MatchProjectionAdapter.h"
#include "libMems/PairwiseMatchFinder.h"
#include "libMems/TreeUtilities.h"
#include "libMems/PairwiseMatchAdapter.h"
#include "libMems/DistanceMatrix.h"
#include <boost/dynamic_bitset.hpp>
#include <boost/tuple/tuple.hpp>
#include <boost/property_map.hpp>
#include <boost/graph/graph_traits.hpp>
#include <boost/graph/adjacency_list.hpp>
#include <boost/graph/johnson_all_pairs_shortest.hpp>
#include <boost/graph/undirected_dfs.hpp>
#include <map>
#include <fstream>
#include <sstream>
#include <stack>
#include <algorithm>
#include <limits>
#include <iomanip>
#include "stdlib.h"

Include dependency graph for ProgressiveAligner.cpp:

Go to the source code of this file.

Namespaces
namespace	mems

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