libMems/MuscleInterface.cpp File Reference

#include "libMems/MuscleInterface.h"
#include "libGenome/gnFilter.h"
#include "libGenome/gnFASSource.h"
#include "libGenome/gnStringTools.h"
#include "libMUSCLE/muscle.h"
#include "libMUSCLE/params.h"
#include "libMUSCLE/msa.h"
#include "libMUSCLE/seq.h"
#include "libMUSCLE/seqvect.h"
#include "libMUSCLE/tree.h"
#include "libMUSCLE/clust.h"
#include "libMUSCLE/profile.h"
#include "libMUSCLE/distfunc.h"
#include "libMUSCLE/clustsetdf.h"
#include "libMUSCLE/textfile.h"
#include "libMUSCLE/types.h"
#include "boost/algorithm/string/erase.hpp"
#include "boost/algorithm/string/case_conv.hpp"
#include <sstream>
#include <fstream>
#include <unistd.h>
#include <fcntl.h>
#include <errno.h>
#include <sys/types.h>
#include <sys/wait.h>

Include dependency graph for MuscleInterface.cpp:

Go to the source code of this file.

Namespaces
namespace	mems
Functions
void	MUSCLE (SeqVect &v, MSA &msaOut)
void	RefineW (const MSA &msaIn, MSA &msaOut)

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Function Documentation

void MUSCLE (  SeqVect &  v, MSA &  msaOut )

Referenced by mems::MuscleInterface::CallMuscleFast().

void RefineW (  const MSA &  msaIn, MSA &  msaOut )

Referenced by mems::MuscleInterface::RefineFast().

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