libMems/GreedyBreakpointElimination.cpp File Reference

#include "libMems/GreedyBreakpointElimination.h"
#include "libMems/ProgressiveAligner.h"
#include "libMems/Aligner.h"
#include "libMems/Islands.h"
#include "libMems/DNAFileSML.h"
#include "libMems/MuscleInterface.h"
#include "libGenome/gnRAWSource.h"
#include "libMems/gnAlignedSequences.h"
#include "libMems/CompactGappedAlignment.h"
#include "libMems/MatchProjectionAdapter.h"
#include "libMems/PairwiseMatchFinder.h"
#include "libMems/TreeUtilities.h"
#include "libMems/PairwiseMatchAdapter.h"
#include <boost/dynamic_bitset.hpp>
#include <boost/tuple/tuple.hpp>
#include <map>
#include <fstream>
#include <sstream>
#include <stack>
#include <algorithm>
#include <limits>
#include <iomanip>

Include dependency graph for GreedyBreakpointElimination.cpp:

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Namespaces
namespace	mems

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